PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 491962
Common NameARALYDRAFT_491962
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 278aa    MW: 31539.1 Da    PI: 7.1449
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
491962genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.4e-19131181256
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
              y+GVr++  +g+WvAeIr p++   r+r++lg+f+taeeAa a+++ + kl+g+
  491962 131 LYRGVRQRQ-WGKWVAEIRKPRS---RARIWLGTFDTAEEAAMAYDRQAFKLRGH 181
             59****999.**********954...4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-34130190No hitNo description
SMARTSM003805.1E-39131194IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-23131189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.3E-32131189IPR001471AP2/ERF domain
PROSITE profilePS5103223.512131188IPR001471AP2/ERF domain
PRINTSPR003671.5E-11132143IPR001471AP2/ERF domain
PfamPF008479.8E-14132181IPR001471AP2/ERF domain
PRINTSPR003671.5E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
LNLCITKGKN VDHSFGEASS TSPRSMKKMK SPNRPKPYFQ SSSSPYSLGA FPFSLDPTLQ  60
NQQQQLGSYV PVEQQHDPTM QGQKQMISFS PQQQQQQYMA KYWSDTLNLS PRGRMMIMSQ  120
ETVQPYSATK LYRGVRQRQW GKWVAEIRKP RSRARIWLGT FDTAEEAAMA YDRQAFKLRG  180
HSATLNFPEH FVNKESELHD SNSSDQKEPE TPQPSEVNLE SKELAVIDVG RDEGMAEAWY  240
NAVTSGWGPE SPLWDDLDSA HQFSESSSSS SLSCPMRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-21130188160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1615720.0AL161572.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68.
GenBankAY0745740.0AY074574.1 Arabidopsis thaliana AT4g28140/F26K10_20 mRNA, complete cds.
GenBankAY0973940.0AY097394.1 Arabidopsis thaliana AT4g28140/F26K10_20 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
GenBankDQ0115790.0DQ011579.1 Arabidopsis thaliana transcription factor QRAP2 (QRAP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867464.10.0hypothetical protein ARALYDRAFT_491962, partial
SwissprotQ9M0J31e-177ERF54_ARATH; Ethylene-responsive transcription factor ERF054
TrEMBLD7MDM60.0D7MDM6_ARALL; Putative uncharacterized protein (Fragment)
STRINGfgenesh2_kg.7__1395__AT4G28140.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.11e-176ERF family protein